Function reference • sampledblib.r

Setup Functions for setting up sampledblib.r
`install_sampledblib()`	Install SampleDBLib
`initialize_sampledb()`	Initialize SampleDB
`set_date_format()`	Set Date Format
CRUD Functions for reading and manipulating SampleDB
`create_location()`	Create Location
`create_specimen_type()`	Create Specimen Type
`create_study()`	Create Study
`find_all_specimens()`	Find All Specimens
`add_matrix_plate_with_specimens()`	Add Matrix Plate with Specimens
`add_study_subject()`	Add study subject
`add_study_subjects()`	Add study subjects
`get_location()`	Get Location
`get_locations()`	Get Locations
`get_matrix_plate()`	Get Matrix Plate
`get_matrix_plates()`	Get Matrix Plates
`get_matrix_tube()`	Get Matrix Tube
`get_matrix_tubes()`	Get Matrix Tubes
`get_matrix_tubes_from_specimens()`	Get Matrix Tubes from Specimens
`get_specimen_type()`	Get Specimen Type
`get_specimen_types()`	Get Specimen Types
`get_specimens()`	Get Specimens
`get_studies()`	Get all studies
`get_study()`	Get study
`get_study_by_short_code()`	Get study by short code
`get_study_subjects()`	Get Study Subjects
`delete_location()`	Delete Location
`delete_matrix_tubes()`	Delete Matrix Tubes
`delete_matrix_tubes_and_specimens()`	Delete Matrix Tubes and Specimens
`delete_plate()`	Delete Plate
`delete_specimen_type()`	Delete Specimen Type
`delete_study_by_id()`	Delete study by ID
`delete_study_subject()`	Delete study subject
`update_location()`	Update Location
`update_matrix_tube_locations()`	Update matrix tube locations
`update_specimen_type()`	Update Specimen Type
`update_study()`	Update Study
`set_matrix_tubes_exhausted()`	Set Matrix Tubes Exhausted
`unset_matrix_tubes_exhausted()`	Unset Matrix Tubes Exhausted
File Parsing Functions to simplify the parsing of files into appropriate datastructures for manipulating the database
`parse_barcode_file()`	Parse Barcode File
`parse_barcode_search_file()`	Parse Barcode Search File
`parse_new_plate_file()`	Parse New Plate File
`parse_plate_update_files()`	Parse Plate Update Files
`parse_specimen_search_file()`	Parse Specimen Search File
`parse_study_subject_file()`	Parse Study Subject File
`parse_subject_search_file()`	Parse Subject Search File

Reference

Setup

CRUD

File Parsing